The protein structure alignment is calculated on the following chains: 4jm2:E; 3ngb:G; 4j6r:G.
4jm2:E: GP120; CORE WITH MINI V3 LOOP;
3ngb:G: ENVELOPE GLYCOPROTEIN GP160; UNP RESIDUES 43-122, 201-303, 325-486;
4j6r:G: ENVELOPE GLYCOPROTEIN GP160;
After structure superposition, other chains that are added to the superimposed structures are: 4jm2:A,B; 3ngb:H,L; 4j6r:H,L.
4jm2:A: PGT 135 HEAVY CHAIN; FAB; 4jm2:B: PGT 135 LIGHT CHAIN; FAB;
3ngb:H: ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN: ANTIBODY VRC01; 3ngb:L: ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN: ANTIBODY VRC01;
4j6r:H: HEAVY CHAIN OF ANTIBODY VRC23; 4j6r:L: LIGHT CHAIN OF ANTIBODY VRC23;

        /3ngbG.pdb/ /G/ 44   49   54   59   64   69   74   79   84   89   94   99   104  109  114  119  124  202  207  212  217  222  227  232  237  242  247  252  257  262  267  272  277  282  287  292  297  324  329  334  339  344  349  354  360  365  370  375  380  385  390  395  406  411  416  421  426  431  436  441  446  451  456  461  466  471  476  481  486  491  
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
/4jm2EAB-tran.pdb/ /E/ 89 94 99 104 109 114 119 124 129 198 203 208 213 218 223 228 233 238 243 248 253 258 263 268 273 278 283 288 293 298 303 327 332 337 342 347 352 358 363 368 373 378 383 388 393 401 406 412 417 422 427 432 437 442 447 452 457 462 467 472 477 482 487 501 506 511 516 521 526 /A/ 1 6 11 16 21 26 31 35 35 39 44 49 54 59 64 69 74 79 82 86 91 96 100 100 101 106 111 116 121 126 138 143 148 153 158 163 168 173 178 183 188 193 198 203 208 213 /B/ 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 76 81 86 91 96 101 106 111 116 121 126 131 136 141 146 151 156 161 166 171 176 181 186 191 196 201 206 211
VTEHFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVGSGSCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNNNTIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNNNTEGSNNTEGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIXXXXXXXXXXXXXXXXXXXXXXXXXXX QLQMQESGPGLVKPSETLSLSCTVSGDSIRGGEWGDKDYHWGWVRHSAGKGLEWIGSIHWRGTTHYKESLRRRVSMSIDTSRNWFSLRLASVTAADTAVYFCARHRHHDVFMLVPIAGWFDVWGPGVQVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK EIVMTQSPDTLSVSPGETVTLSCRASQNINKNLAWYQYKPGQSPRLVIFETYSKIAAFPARFVASGSGTEFTLTINNMQSEDVAVYYCQQYEEWPRTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
/3ngbGHL-tran.pdb/ /G/ 44 49 54 59 64 69 74 79 84 89 94 99 104 109 114 119 124 202 207 212 217 222 227 232 237 242 247 252 257 262 267 272 277 282 287 292 297 324 329 334 339 344 349 354 360 365 370 375 380 385 390 395 406 411 416 421 426 431 436 441 446 451 456 461 466 471 476 481 486 491 762 886 /H/ 1 6 11 16 21 26 31 36 41 46 51 55 60 65 70 75 80 82 87 92 97 100 103 108 113 118 123 128 133 138 143 148 153 158 163 168 173 178 183 188 193 198 203 208 213 /L/ 3 8 13 18 23 28 35 40 45 50 55 60 65 70 75 80 85 90 99 104 109 114 119 124 129 134 139 144 149 154 159 164 169 174 179 184 189 194 199 204 209 214 572
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEXXXXXXXXXXXX QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSSPSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSC VLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGECXXXXX
/4j6rGHL-tran.pdb/ /G/ 44 49 54 59 64 69 74 79 84 89 94 99 104 109 114 119 124 202 207 212 217 222 227 232 237 242 247 252 257 262 267 272 277 282 287 292 297 328 333 338 343 348 353 359 364 369 374 379 384 389 394 399 404 415 420 425 430 435 440 445 450 455 460 465 470 475 480 485 490 503 508 513 /H/ 1 6 11 16 21 26 31 36 41 46 51 55 60 65 70 75 80 82 87 92 97 100 103 108 113 118 123 128 133 138 143 148 153 158 163 168 173 178 183 188 193 198 203 208 213 304 309 /L/ 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 76 81 86 91 100 105 110 115 120 125 130 135 140 145 150 155 160 165 170 175 180 185 190 195 200 205 210 301
VWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTGGSAITQACPKVSFEPIPIHYCTPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRDIRQAHCNVTRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTNDTITLPCRIKQIINMWQRAGQAMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEXXXXXXXXXCAXXXX EVQFVQSGAEVKKPGASVRVSCEASGYSFTDYVLQWIRQAPGQRPEWMGWIKPERGAVSYAPQFQGRLTLTRDLYTETAYMHFKNLRSDDTAIYYCARGVRRDASWWLQFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKXXXXXXXXXX EIVMTQSPVTVSVSRGGTATLSCRASQGVGSDVAWYQHKPGQTPRLLIYGASTRASGVPERFSGSGFHVDFTLSISGLQPEDVAIYYCQQYETFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECCAXXXX

PGT135_VRC01_VRC23-G.pdb
3ngbG.pdb
4jm2EAB-tran.pdb
3ngbGHL-tran.pdb
4j6rGHL-tran.pdb
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