FATCAT benchmarking

(This site is under construction ...)

FATCAT benchmarking

Download the list of unrelated structure pairs (of length from 40 to 400) for FATCAT significance estimate:
40; 70; 100; 130; 160; 190; 220; 250; 280; 310; 340; 370; 400;
Download the benchmark for FATCAT

Similarities between structures from different SCOP folds

8769 pairs of structurs from different SCOP folds are analyzed(download)
In 475 pairs, structural similarity was detected by FATCAT at 5% significance level(download)
In 70 pairs, similarity was further confirmed by both DALI (Z-score>2.0) and CE (Z-score>3.5)(download)
In 122 pairs, similarity was further confirmed by either DALI (Z-score>2.0) or CE (Z-score>3.5)(download)
In 283 pairs, similarity was only detected by FATCAT(download)

The FATCAT search results for 133 structures from structural genomic centers

Go to the result page

Godzik Laboratory, The Burnham Institute,
10901 North Torrey Pines Road,
La Jolla, California 92037
Contact: Yuzhen Ye

Go to the FATCAT server

First set up Sep 6, 2003; Latest maintenance Sep 6, 2003